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Home > Tools & Resources > DO Slims

Subsets of the Human Disease Ontology (Slims)

The DO project produces subsets of the ontology for specific use cases with each release. The subset files are found in the DO GitHub repository's src/ontology/subsets directory. Subsets are created for specific use cases (e.g. AGR, FlyBase) or to facilate querying the DO (e.g. NCIthesaurus cancer terms, rare disease).

DO Subset Use Cases Terms
DO_AGR_slim Alliance of Genome Resources 28
DO_CFDE_slim NIH Common Fund Data Ecosystem 44
DO_IEDB_slim Immune Epitope Database 154
DO_GXD_slim Gene eXpression Database 26
DO_cancer_slim CIViC, HIVE: BioMuta & BioXpress 681
DO_FlyBase_slim FlyBase 185
DO_RAD_slim RadoNorm 81
DO_rare_slim 3,199
DO_infectious_disease_slim 526
gram-negative_bacterial_infectious_disease 305
gram-positive_bacterial_infectious_disease 173
NCIthesaurus 4,572
sexually_transmitted_infectious_disease 82
tick-borne_infectious_disease 44
TopNodes_DOcancerslim 58
zoonotic_infectious_disease 183
  • Alliance of Genome Resources logo
  • NIH Common Fund Data Ecosystem logo
  • Immune Epitope Database logo
  • Gene Expression Database logo
  • MGI logo
  • CIViC logo
  • HIVE logo
  • FlyBase logo
  • RadoNorm logo
Last updated: June 2024