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Home > DO resources > DO Imports

Subsets of the Human Disease Ontology (Slims)

The DO project produces with each release subsets of the ontology for specific usecases. The subset files are found in the DO's GitHub. Subsets are created for specific use cases (e.g. AGR, FlyBase) or to facilate querying the DO (e.g. NCIthesaurus cancer terms, rare disease)

DO subset Use Cases term count
DO_AGR_slim Alliance of Genome Resources 28
DO_CFDE_slim NIH Common Fund Data Ecosystem 44
DO_IEDB_slim Immune Epitope Database 154
DO_GXD_slim Gene eXpression Database 26
DO_MGI_slim MGI-HMDC 32
DO_cancer_slim CIViC, HIVE: BioMuta, BioXpress 482
DO_FlyBase_slim FlyBase 185
DO_RAD_slim RadoNorm 81
DO_rare_slim 528
gram-negative-bacterial-infectious-disease 305
gram-positive-bacterial-infectious-disease 173
NCIthesaurus 4,257
sexually_transmitted_infectious_disease 82
tick-borne_infectious_disease 44
TopNodes_DOcancerslim 58
zoonotic_infectious_disease 183
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Last modified: July 2021
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